Authors

Discussion

SynEcoSys® Database is the first comprehensive single cell knowledgebase that combines curated data from tens of millions of single cells with information on clinical translation and drug discovery. All provided datasets are processed with uniform standards of data analysis and cell type annotation to guarantee precision and inter-comparability.

For disease-related datasets, any available clinical information associated with the single-cell data including descriptions from the text of publications are collected and organized as sample metadata, such as patient disease stages, disease subtypes, mutations carried, treatment methods, and responses to treatment.

SynEcoSys® is a one-stop single cell data visualization and mining platform with intuitive user interface to make single cell data accessible. CeleViz data visualization module is embedded into the database to offer elegant graphical data visualizations compatible with major scientific journal requirements. CeleLens (Lite) module facilitates automated data analysis pipeline with tunable analysis parameters and annotation.

It comprises 480+ datasets, 7300+ samples, 480+ cell types, 7000+ marker genes, 110+ tissue types, and more than 27 million cells sequenced.